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Recent Papers

Hamann L, Werner J, Haase FJ, Thiel M, Scherwaß A, Laforsch C, Löder MGJ, Blanke A, Arndt H (2024) Retention of microplastics by biofilms and their ingestion by protists in rivers. Environmental microbiology reports 16:e70016
PUBMED:39384165

Rajan D, Lee B, Albright A, Tang E, Maravillas A, Vargas C, Marshall WF, Cortes D (2024) Phylogeny, morphology, and behavior of the new ciliate species . bioRxiv : the preprint server for biology :
PUBMED:39131352

Zhang KS, Rodriguez R, Tang SKY (2024) SMORES: a simple microfluidic operating room for the examination and surgery of Stentor coeruleus. Scientific reports 14:8684
PUBMED:38622246

BLAST Server at StentorDB

Click here for information about the BLAST process and help with advanced options.

BLAST Program

blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database

Database

Stentor coeruleus (protein)
Stentor coeruleus CDS (nucleotide)
Stentor coeruleus Assembly (nucleotide)
Chlorella (protein)
Chlorella (nucleotide)
Stentor pyriformis (protein)
Stentor pyriformis CDS (nucleotide)
Stentor pyriformis Assembly (nucleotide)

Query Sequence Enter sequence below in FASTA format

Or load it from disk:
Set subsequence from to

Advanced Options

Filter for low copmlexity regions

Perform ungapped alignment

Expect
Matrix
Alignments

Query Genetic Codes (blastx only)
Database Genetic Codes (tblast[nx] only)

Other advanced options:

Wiki Links

External Links

Ciliate Genomics Consortium

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The Ciliate.org project at Bradley University is supported by a grant from the National Center for Research Resources, part of the US National Institutes of Health.